Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
gene set testing
•
reset
0
votes
0
replies
727
views
Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast
camera
gene set testing
4.0 years ago
svlachavas
▴ 830
4
votes
11
replies
2.4k
views
Dealing with duplicated genes in camera gene set testing
limma
camera
gene set testing
ensembl
updated 4.8 years ago by
Robert Castelo
★ 3.4k • written 4.8 years ago by
Jeremy Beales
▴ 10
2
votes
3
replies
1.5k
views
Perform limma based gene-set testing for a two-group comparison in a microarray dataset regarding specific biological processes
limma
agilent microarrays
mroast
fry gene tests
gene set testing
updated 6.0 years ago by
Gordon Smyth
51k • written 6.0 years ago by
svlachavas
▴ 830
7
votes
2
replies
1.6k
views
Pre-ranked camera gene set testing with edgeR results
limma
camera
cameraPR
edgeR
gene set testing
updated 6.0 years ago by
Gordon Smyth
51k • written 6.0 years ago by
jamie.gearing
▴ 60
1
vote
4
replies
1.4k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma
roast
statistics
source code
gene set testing
6.1 years ago
Andrea Carenzo
• 0
0
votes
1
reply
1.5k
views
GAGE function and the same.dir option
gage
gene set testing
updated 6.3 years ago by
Luo Weijun
★ 1.6k • written 6.4 years ago by
Aurora
▴ 20
2
votes
4
replies
1.9k
views
EGSEA usage with microarray data (with vooma)?
EGSEA
gene set testing
vooma
limma voom
gsea
updated 4 months ago by
Chris
▴ 20 • written 7.7 years ago by
Pekka Kohonen
▴ 190
4
votes
6
replies
2.1k
views
Gene set Testing with Limma for Agilent IDs probes?
limma
agilent microarrays
gene set testing
annotation
7.7 years ago
Bouzid.a
▴ 20
7
votes
13
replies
2.5k
views
Test whether expression levels of two gene sets are significantly different
R
DESeq2
gene set testing
gene expression
7.9 years ago
Jon Bråte
▴ 250
3
votes
4
replies
1.7k
views
Competitive gene set testing between two sets of genes
gene set testing
camera
edger
updated 8.2 years ago by
Gordon Smyth
51k • written 8.2 years ago by
le2336
▴ 20
1
vote
0
replies
1.5k
views
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea
ncrna
coexpression
gene set analysis
gene set testing
8.4 years ago
m.fletcher
▴ 20
1
vote
5
replies
2.2k
views
Confused by results from CAMERA gene set testing
limma
camera
gene set testing
8.4 years ago
claire.n.levy
▴ 10
7
votes
6
replies
3.3k
views
Interpretation of mroast gene set analysis in R and appropriate use of the function barcode plot regarding a microarray dataset
limma
mroast
barcodeplot
KEGG
gene set testing
updated 8.8 years ago by
Gordon Smyth
51k • written 8.8 years ago by
svlachavas
▴ 830
6
votes
10
replies
2.0k
views
Possible implementation of roast/mroast for testing common DE patterns across two different experiments
gene set testing
roast
mroast
differential gene expression
bioconductor
9.4 years ago
svlachavas
▴ 830
14 results • Page
1 of 1
Recent ...
Replies
Answer: Poor dispersion fit in DESeq2
by
Michael Love
42k
The fit (red line) doesn't matter because you have so many samples. Note there is almost no shrinkage. Besides that you may be intereste…
Answer: DESeq2 analysis on 2 plant lines infected with virus, with 2 time points (days p
by
Michael Love
42k
I'd recommend actually meeting with a local statistician to work out the analysis plan, or someone familiar with linear models in R. I h…
Answer: DESeq2 design and contrasts with 2 drug-treated and one control group
by
Michael Love
42k
> Now I am interested in comparing the DE genes between the resistant and acute groups, but I am unsure how to account for DMSO in that com…
Answer: Spectra and PSMatch- trouble in reducePSMs, joinSpectraData, or countIdentificat
by
Laurent Gatto
1.6k
Tthis happens because the sequence spectraVariable is expected to be an atomic vector or a List with elements of length 1, but it's not - s…
Comment: How should I run ssGSEA Hallmark Enrichment Analysis?
by
Ginny
• 0
I think the other side of this question is that the non protein coding genes would be in the "background", they would influence the ranking…
Votes
Answer: ISO a solution to rank-order introns by transcript
Answer: ISO a solution to rank-order introns by transcript
Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c
Answer: Issues with retrieving Zea mays genes dataset: biomaRt error: looks like we're c
Answer: addPatternDensity in 'qsea' takes too much time
Awards
• All
Popular Question
to
Robert Castelo
★ 3.4k
Scholar
to
James W. MacDonald
67k
Popular Question
to
mat149
▴ 80
Popular Question
to
Gordon Smyth
51k
Popular Question
to
Kevin
• 0
Locations
• All
The city by the bay,
11 minutes ago
WEHI, Melbourne, Australia,
1 hour ago
UPF, Barcelona, Spain,
2 hours ago
San Diego,
8 hours ago
Pakistan,
8 hours ago
Traffic: 505 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6