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gene set testing
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815
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Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast
camera
gene set testing
4.5 years ago
svlachavas
▴ 840
4
votes
11
replies
2.8k
views
Dealing with duplicated genes in camera gene set testing
limma
camera
gene set testing
ensembl
updated 5.3 years ago by
Robert Castelo
★ 3.4k • written 5.3 years ago by
Jeremy Beales
▴ 10
2
votes
3
replies
1.7k
views
Perform limma based gene-set testing for a two-group comparison in a microarray dataset regarding specific biological processes
limma
agilent microarrays
mroast
fry gene tests
gene set testing
updated 6.5 years ago by
Gordon Smyth
52k • written 6.5 years ago by
svlachavas
▴ 840
7
votes
2
replies
1.8k
views
Pre-ranked camera gene set testing with edgeR results
limma
camera
cameraPR
edgeR
gene set testing
updated 6.6 years ago by
Gordon Smyth
52k • written 6.6 years ago by
jamie.gearing
▴ 60
1
vote
4
replies
1.5k
views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma
roast
statistics
source code
gene set testing
6.6 years ago
Andrea Carenzo
• 0
0
votes
1
reply
1.6k
views
GAGE function and the same.dir option
gage
gene set testing
updated 6.9 years ago by
Luo Weijun
★ 1.6k • written 6.9 years ago by
Aurora
▴ 20
2
votes
4
replies
2.1k
views
EGSEA usage with microarray data (with vooma)?
EGSEA
gene set testing
vooma
limma voom
gsea
updated 11 months ago by
Chris
▴ 20 • written 8.3 years ago by
Pekka Kohonen
▴ 190
4
votes
6
replies
2.3k
views
Gene set Testing with Limma for Agilent IDs probes?
limma
agilent microarrays
gene set testing
annotation
8.2 years ago
Bouzid.a
▴ 20
7
votes
13
replies
2.9k
views
Test whether expression levels of two gene sets are significantly different
R
DESeq2
gene set testing
gene expression
8.4 years ago
Jon Bråte
▴ 260
3
votes
4
replies
1.9k
views
Competitive gene set testing between two sets of genes
gene set testing
camera
edger
updated 8.8 years ago by
Gordon Smyth
52k • written 8.8 years ago by
le2336
▴ 20
1
vote
0
replies
1.6k
views
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea
ncrna
coexpression
gene set analysis
gene set testing
8.9 years ago
m.fletcher
▴ 20
1
vote
5
replies
2.4k
views
Confused by results from CAMERA gene set testing
limma
camera
gene set testing
9.0 years ago
claire.n.levy
▴ 10
7
votes
6
replies
3.5k
views
Interpretation of mroast gene set analysis in R and appropriate use of the function barcode plot regarding a microarray dataset
limma
mroast
barcodeplot
KEGG
gene set testing
updated 9.3 years ago by
Gordon Smyth
52k • written 9.3 years ago by
svlachavas
▴ 840
6
votes
10
replies
2.2k
views
Possible implementation of roast/mroast for testing common DE patterns across two different experiments
gene set testing
roast
mroast
differential gene expression
bioconductor
9.9 years ago
svlachavas
▴ 840
14 results • Page
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Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Comment: Question on displaying color photo as Greyscale in EBImage
by
Albert
• 0
great and very nice
Comment: European Bioconductor Conference 2023 planning
by
Pandora
• 0
The [Tag Game][1] is not just a simple chase; it involves strategy and tactics as players must think quickly to avoid being tagged. Various…
Comment: Generalized edgeR functions
by
bukarimanches
• 0
I have estimated the new parameter set, it doesn't seem as useful as I thought [geometry dash lite][1] [1]: https://geometry-lite.com/
Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G
by
Morse
• 0
[Geometry Dash Lite][1] is the free version of the famous Geometry Dash series. It was made by RobTop Games and lets players enjoy the thri…
Votes
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
what the test method for enrichGO in clusterProfiler?
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